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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "pould" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'pould: Phased or Unphased Linkage Disequilibrium'
version: 1.0.1
doi: 10.32614/CRAN.package.pould
abstract: Computes the D', Wn, and conditional asymmetric linkage disequilibrium (ALD)
  measures for pairs of genetic loci. Performs these linkage disequilibrium (LD) calculations
  on phased genotype data recorded using Genotype List (GL) String or columnar formats.
  Alternatively, generates expectation-maximization (EM) estimated haplotypes from
  phased data, or performs LD calculations on EM estimated haplotypes. Performs sign
  tests comparing LD values for phased and unphased datasets, and generates heat-maps
  for each LD measure. Described by Osoegawa et al. (2019a) <https://doi.org/10.1016/j.humimm.2019.01.010>,
  and Osoegawa et. al. (2019b) <https://doi.org/10.1016/j.humimm.2019.05.018>.
authors:
- family-names: Mack
  given-names: Steven
  email: steven.mack@ucsf.edu
repository: https://sjmack.r-universe.dev
commit: a808c93ff5eec1a7e933add3ddf88903a49ac364
date-released: '2020-10-16'
contact:
- family-names: Mack
  given-names: Steven
  email: steven.mack@ucsf.edu